PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun001560
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TCP
Protein Properties Length: 359aa    MW: 39512.1 Da    PI: 8.7373
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-167a-Vigna_unguiculata-3926PU_refplantGDBView CDS
gnl|UG|Vun#S45817165PU_unrefUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP102.66.5e-32501772117
        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.........eaesssssasnsssg.... 88 
                 g+kdrhsk++T +g+RdRRvRls+++a+ ++dLqd+LG+ ++sk ++WLl++ak++i+el+ ++ ++ +++         +++s ++++          
  Vun001560  50 FGGKDRHSKVCTVRGLRDRRVRLSVPTAIHLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLPIPPGNFTlgypslvacNEGSGQNTNT----Lwksk 145
                689*************************************************************777775555433222223333333333....03333 PP

        TCP  89 ............kaaksaakskksqksaasalnlakesrak 117
                            +         +s+++++++ n + +++a+
  Vun001560 146 sgemvsdkanwiN---------RSEDDTNNNTNTNTDTNAN 177
                3333333333331.........3333333333333333332 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136931.09752110IPR017887Transcription factor TCP subgroup
PfamPF036343.4E-2952175IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MINSTKEAGF PLKQEGVSSS DHEKAKASSS SSSQWLKLKD PRIVRVSRAF GGKDRHSKVC  60
TVRGLRDRRV RLSVPTAIHL YDLQDRLGLN QPSKVVDWLL NAAKHEIDEL PPLPIPPGNF  120
TLGYPSLVAC NEGSGQNTNT LWKSKSGEMV SDKANWINRS EDDTNNNTNT NTDTNANTAS  180
DCDNKHCHGA HVFPNNLLPR PNHPSFLGLM NTMPSLGYQW EASSGDVAQW ANHGFVNQTD  240
IHSINVVPIP SSTLALSTGN TSTPQILVCP SGATQPYFPS HVAAMEMNAR QINHYQMLTS  300
GSQNLLANSL NPSSQQLMTQ SGKVPFSLVR PKLFHSPNTT ESHHHHHHPR KDQDFPSKS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014511237.10.0PREDICTED: transcription factor TCP13
RefseqXP_014511156.10.0PREDICTED: transcription factor TCP13
TrEMBLA0A0S3T7Y10.0A0A0S3T7Y1_PHAAN; Uncharacterized protein
TrEMBLA0A0L9VNH40.0A0A0L9VNH4_PHAAN; Uncharacterized protein
STRINGGLYMA19G03786.11e-171(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.11e-38plastid transcription factor 1